BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022F03SP1|AL427928
(860 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1167 1081 0.0
>3x_Contig1167
Length = 4801
Score = 1081 bits (540), Expect = 0.0
Identities = 582/603 (96%), Gaps = 1/603 (0%)
Strand = Plus / Minus
Query: 259 aaatcagtgacattgagacttgggataaggg-cgaacgtattattcgtactcgactgana 317
||||||||||||||||||||||||| || | |||||||| ||||||||||||||||| |
Sbjct: 2336 aaatcagtgacattgagacttgggaaaaagttcgaacgtaatattcgtactcgactgata 2277
Query: 318 aaagaccttccggatcccctatgtccattcactgtgaaagtgaaagaktcaactgcagaa 377
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2276 aaagaccttccggatcccctatgtccattcactgtgaaagtgaaagattcaactgcagaa 2217
Query: 378 gacaaattgatcgggctggatgctgccaatttcgatatcgacaacgttatgttcatgact 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2216 gacaaattgatcgggctggatgctgccaatttcgatatcgacaacgttatgttcatgact 2157
Query: 438 caaaaccaatcaaacagcaacactaattcttatacccaatacaacacaacgataccattt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2156 caaaaccaatcaaacagcaacactaattcttatacccaatacaacacaacgataccattt 2097
Query: 498 gccaacgctgattcaagaaggcagtgccttaaactgaacctagaggtcagtatttgatca 557
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2096 gccaacgctgattcaagaaggcagttccttaaactgaacctagaggtcagtatttgatca 2037
Query: 558 tctttgtgattaaagtattcctgttagtttcccataatattctgtttttctgctgatata 617
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2036 tctttgtgatcaaagtattcctgtcagtttcccataatattctgtttttctgctgatata 1977
Query: 618 ttttattctaatagtttaaacacactttcgagtagccatatactcttaagcaatcctagt 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976 ttttattctaatagtttaaacacactttcgagtagccatatactcttaagcaatcctagt 1917
Query: 678 accaccttatataakgkcataattttacgtgttgttttgtttctgttttttcaaatctga 737
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1916 accaccttatataatgtcataattttacgtgttgttttgtttctgttttttcaaatctga 1857
Query: 738 tggttgtkacaatkctkgcctkaacgtgcaactctactkatagkackatgaaagggtgka 797
||||||| ||||| || |||| |||||||||||||||| |||| || ||||||||||| |
Sbjct: 1856 tggttgttacaattcttgccttaacgtgcaactctacttatagtactatgaaagggtgta 1797
Query: 798 taaaagaaaaacactgctggtgtaagacagtdagcacaaagacagcaagcacaactacta 857
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1796 taaaagaaaaacactgctggtgtaagacagtaagcacaaagacagcaagcacaactacta 1737
Query: 858 cca 860
|||
Sbjct: 1736 cca 1734
Score = 242 bits (121), Expect = 7e-64
Identities = 192/212 (90%), Gaps = 4/212 (1%)
Strand = Plus / Minus
Query: 25 acccagactcaactgttaaccgttctatctcgaggtcctcgacaccattaggtttatcaa 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 acccagactcaactgttaaccgttctatctcgaggtcctcgacaccattaggtttatcaa 2519
Query: 85 --tatcgacaccatcgtccccc-aacatatctcaaccattacaatacacattctcgtcga 141
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 2518 ataatcgacaccatcgtcccccaaacatatctctaccattacaatacacattctcgtcga 2459
Query: 142 aatcaatgtcacaacccagctcaccgcttctaaataagatctcatcttatagtcagatca 201
||| ||||| | |||| |||| |||||||| ||| || |||| ||||||| |||||||||
Sbjct: 2458 aataaatgtaaaaaccaagctaaccgcttcaaaaaaaaatctaatcttattgtcagatca 2399
Query: 202 ataacatcattaagatgaa-gataaatttcgg 232
| || || |||||||||| ||||||||||||
Sbjct: 2398 aaaaactccttaagatgaaggataaatttcgg 2367
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5973
Number of Sequences: 1807
Number of extensions: 5973
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 860
length of database: 10,358,551
effective HSP length: 16
effective length of query: 844
effective length of database: 10,329,639
effective search space: 8718215316
effective search space used: 8718215316
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)